PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13230.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 295aa    MW: 33461.4 Da    PI: 6.7316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
       PHU13230.1 17 KGPWSSEEDIRLIAFIQKHGHQNWRSLPKQAGLLRCGKSCRLRWINYL 64
                     79******************************99************97 PP
2Myb_DNA-binding54.13.6e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
       PHU13230.1  70 RGNFTPQEEETIIKLHQSFGNK-WSRIASHLP-GRTDNEIKNVWNTHL 115
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MMGKGRAPCC DKSKVKKGPW SSEEDIRLIA FIQKHGHQNW RSLPKQAGLL RCGKSCRLRW  60
INYLRPDVKR GNFTPQEEET IIKLHQSFGN KWSRIASHLP GRTDNEIKNV WNTHLKKRLM  120
KRLHGDKAKL DGTCANSQSS SSSTSVVSHT DDTSNEGKFK NVDANMIIEN ATKEEEATKS  180
CSPTSSYASN LSQVHEASSP NNVDMDWIFQ FSEEPFPSTT ARKVHDDDDE GIIEIPLECD  240
VDFWDMLDIM GPSPPPPPPP NSESKLDHHS EASCQGLSEF ERQKWFTYFE RELGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-79MYB family protein