PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU13151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28542.2 Da PI: 6.544 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.5e-15 | 2 | 42 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++i+++ nr+ t+ kR++ + KK +EL +LC+++v++iif+ PHU13151.1 2 EFIQDHKNRKSTLVKRKASLVKKISELAILCGIKVCMIIFG 42 689*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MEFIQDHKNR KSTLVKRKAS LVKKISELAI LCGIKVCMII FGGITDQDTS QRDQIWPNDP 60 KEVDELINLY KNQPLTCRSK RAKTFSNFFE NQRKNPEIKA EKYPTWDSRF DYLSEKELQN 120 LARVLEKRIE DAKGKAEFLK STNTRSSSLL SHQEIRDYTE LMNNNYNNLM NQATSLWPSI 180 NYNFFQANIQ SGVNSMGTGM DIQPLTIDDY QFEDADYSMK IEAENWLANN GIGSSSTIMA 240 YPIIYNA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-18 | M-type_MADS family protein |