PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13029.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32642.2 Da    PI: 6.8647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.88e-15442341
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                i+++ nr+ tf kR++ ++KK +EL +LC++++++ii++
  PHU13029.1  4 IQDHKNRKSTFVKRKASLIKKISELAILCGIKACMIIYG 42
                899***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MELIQDHKNR KSTFVKRKAS LIKKISELAI LCGIKACMII YGGIDDQVVP QHDQIWPNDP  60
KEVEELINLY KNQPLEGRSK RAKSLSNFFE NQKKKKAEIK EEKYPTWYSR FDYLSEKELR  120
NLARVLEKRI DDAKGKAEFL KSANIGSSSL LSHHEIRDYT ELMNNNYYNL MNQTTYPWPS  180
INYNNFFQEN IPSDVISMGA KMEIQPLTID DYQFDDADYS MKIEAENWLA NNGIGTSSTI  240
MVSDPHLKFM NIDHSKSPAP FLMLVNVSIS CAGTGCCHLW CFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-16M-type_MADS family protein