PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12959.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 547aa    MW: 61072.9 Da    PI: 5.4493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.11.5e-1371775471374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e+L++cA+a+++++l  a++l+++l++ +s  g+pmqRl ay++e+L arla+s+s++ykal+++e +   s+e +++++l++e++P++kf++l aN
  PHU12959.1 177 LKEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPMQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---SVELFSYMHLLYEICPYFKFGYLSAN 272
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI++a+++e+ +HiiDf++ qG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++++vpfef++ va +++d+e+++L+v
  PHU12959.1 273 GAIVDAMKSENSIHIIDFQVAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSVAASCNVPFEFHP-VAASCSDVEIKHLNV 370
                 **************************************************998899999************************.799************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr+++eri+vE+++l+reiv
  PHU12959.1 371 RPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPRFLETLNYYLSVFESIDVALPRDHKERINVEQHCLAREIV 469
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+erhe le+Wr+r+++aGF+p+pls+++++++k+ll+++++  y+++e++g l+lgW++r Lv+ +aW+
  PHU12959.1 470 NILACEGAERVERHELLERWRSRFSMAGFEPYPLSSSVNATIKTLLENYYQS-YTLDERNGVLYLGWMNRDLVASCAWK 547
                 **************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MRPSQNAEDI KEFNRFFNQP IEYQDSFFLP SVNNPNNNQS FYADRGQQTQ VSALKPDQHC  60
YVESSTGNSS ELVSDSPPID AFFADGTPMM HQGSDSCRSD MHHSPDETHH SSGNSSCFTS  120
DVTDLKHKLR EIETAMLGPD SESLESYNTT PVAAANQISS ESDKLVGVME MMPRGDLKEV  180
LIACAKAIAE NNLITAEWLM SELRTVVSVC GSPMQRLGAY MLEGLVARLA SSGSSIYKAL  240
RCKEPTSVEL FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK SENSIHIIDF QVAQGSQWIT  300
LIHALAARPG GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSVAASCNVP FEFHPVAASC  360
SDVEIKHLNV RPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES  420
NTNTVQFFPR FLETLNYYLS VFESIDVALP RDHKERINVE QHCLAREIVN ILACEGAERV  480
ERHELLERWR SRFSMAGFEP YPLSSSVNAT IKTLLENYYQ SYTLDERNGV LYLGWMNRDL  540
VASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein