PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12866.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 313aa MW: 34874.9 Da PI: 6.5062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F + L H+r H PHU12866.1 56 CHVCSKGFGSGKALGGHMRIH 76 *******************99 PP
2	zf-C2H2	14.7	8.7e-05	110	129	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F++ +L H+r PHU12866.1 110 TCSICGKNFPSMKSLFGHMR 129 6******************8 PP
3	zf-C2H2	14	0.00015	236	251	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ykC+ Cgk+F ++ L PHU12866.1 236 YKCNTCGKTFATHQAL 251 9**********99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MVDCQDSRVG METGTGSLWI SEDDKFEDHE YGVKDDEVEI PKNKNDDDDD NKRRICHVCS 60 KGFGSGKALG GHMRIHVQAS KKLLLSCRKG KKSKTVLQTD EEEDDQLLPT CSICGKNFPS 120 MKSLFGHMRC HPERAWRGIQ PPEDIDRKTA AASTVTVPVW SVTAKRGRKA NAEDATYSGS 180 KDEEQLHDAV HHLMLLANGD SIESGLTGGG IPEKTNSNSL TSNKKKTKLR HLDENYKCNT 240 CGKTFATHQA LGGHNKFRIV IQNSDVTNIG ANSQDAAAVS QRILDFDLNE LPPDHEDEQL 300 SRNHDYYFPF FPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	1e-21	C2H2 family protein