PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12486.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 370aa MW: 41333.8 Da PI: 10.3526

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.8	1.5e-14	70	160	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Liea + +l++g+l+ ++We+v++++ + ++ r+ qCk++++ l+k+yk +k+ ++ + st+p+f++l+ PHU12486.1 70 CWSEAATHTLIEAWGGKYVELNKGSLRHQHWEAVADAVnalhgHTKKQYRTEMQCKNRIDTLKKKYKIEKAKVSESPGRYFSTWPFFSSLN 160 7***********************************999987777889*****************99998888889****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MLRRHNHTHN PPSPSPISSP NPNSHPADTA AVSHSGAMSD DKSPSPTAAA LTVTPAVSSR 60 TAAFPAREDC WSEAATHTLI EAWGGKYVEL NKGSLRHQHW EAVADAVNAL HGHTKKQYRT 120 EMQCKNRIDT LKKKYKIEKA KVSESPGRYF STWPFFSSLN ALLGVTVKAS PPPPFTQRRT 180 PTQPVMPPHQ WRAPPRPEMP PLQWRPPPPD TSPLEWRTPS QLPPPLLGVP VASRSKRPGA 240 TIDYTVSRRN FSAMAAAAAG SSDDSEEEEE EKEESETSSL AASAMANASS KSKRKRNGGL 300 VEGYKMLAEA VGKFSETYER VEKAKQRQMV ELEKQRMQFT KDLEIQRMKL MMESQVHLEK 360 LKRSNKQFRR

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MLRRHNHTHN PPSPSPISSP NPNSHPADTA AVSHSGAMSD DKSPSPTAAA LTVTPAVSSR  60
TAAFPAREDC WSEAATHTLI EAWGGKYVEL NKGSLRHQHW EAVADAVNAL HGHTKKQYRT  120
EMQCKNRIDT LKKKYKIEKA KVSESPGRYF STWPFFSSLN ALLGVTVKAS PPPPFTQRRT  180
PTQPVMPPHQ WRAPPRPEMP PLQWRPPPPD TSPLEWRTPS QLPPPLLGVP VASRSKRPGA  240
TIDYTVSRRN FSAMAAAAAG SSDDSEEEEE EKEESETSSL AASAMANASS KSKRKRNGGL  300
VEGYKMLAEA VGKFSETYER VEKAKQRQMV ELEKQRMQFT KDLEIQRMKL MMESQVHLEK  360
LKRSNKQFRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-40	Trihelix family protein