PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12467.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 611aa MW: 70124.8 Da PI: 6.6262

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	101.3	1.4e-31	177	454	85	357
GRAS 85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179 ++ P+ kf+h+taN+aI e v ++ ++vHi+Dfd+++ +QWp++++a+ +R++ lR T +++ e++ ++ + eet++rL ++A+ +g++++ + PHU12467.1 177 GNINPLGKFAHFTANSAIIEVVPNDaQTVHIVDFDMGEWIQWPPIIEAIRQRRKA---LRCTSIKKTEEKstsDQWRFEETKRRLLDYANLFGLRLQVE 272 5789****************99889********************9766...***98887888999******************* PP GRAS 180 vlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqe...adhnse.sFlerflealeyysalf 268 ++ + ++l+ + r k+ E l+ n++++l ++ ++ ++ +++L + s+ +v++ + e ++hn + ++ + f + l yy +++ PHU12467.1 273 EMTIEeLASELRRMKKRGKESEWLVFNCMFKLPHMGKRMCRIDAleflkLATKLLLAKYSTHKGLVTFGDGEatdISHNPNyTYSTFFNKNLIYYQSIL 371 99555244555555666777***********977777766434434445555555677889*994334453225899999******* PP GRAS 269 dsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 +sle +p+ ++r + +l++++ + + e ++++ + +e G++ ++s+++ qa+ l+++ + +rv e s + PHU12467.1 372 ESLEFCFPAYLaQARLAMQFLFLAPQVFSFTWIKIWE------EKRSVSYYCQEIGLQGKRVSKENLLQARELVNERGTP-FRVLELSSC 454 ***9987699999999999999998888777......345557789999*******************999965.888877766 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MQSELFHNSW CSTFHQTEFC GIQSDYENGK HGITYPSLNS KYQDSSRISF LDFTSQSFSD 60 FTSLFSDDNV LTDHPMDDSK FNDVCRWLND NESVGYGNMN NISSKMKRDG DLWSPDLSGV 120 SCELLPLTNS NTSLILLGNI RETDIQMSLH HLLADYGEAM ENGHKELAEV IIRSIKGNIN 180 PLGKFAHFTA NSAIIEVVPN DAQTVHIVDF DMGEWIQWPP IIEAIRQRRK ALRCTSIKKT 240 EEKSTSDQWR FEETKRRLLD YANLFGLRLQ VEEMTIEELA SELRRMKKRG KESEWLVFNC 300 MFKLPHMGKR MCRIDALEFL KLATKLLLAK YSTHKGLVTF GDGEATDISH NPNYTYSTFF 360 NKNLIYYQSI LESLEFCFPA YLAQARLAMQ FLFLAPQVFS FTWIKIWEEK RSVSYYCQEI 420 GLQGKRVSKE NLLQARELVN ERGTPFRVLE LSSCSRLVSC TLWTILCDLW DVLVSFLGRF 480 VSFGIRARVI FGTTTMEPEA SNAQTMDNNA INLILARVET MSRDVASLNV GLKKLDTDVA 540 LMSGRLERVE RQRSKTSTPQ NNFPTNTPET LHQMLYPPIA TNPTNLYSRS REQDKPNHPP 600 LNKFQQEGLG T

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MQSELFHNSW CSTFHQTEFC GIQSDYENGK HGITYPSLNS KYQDSSRISF LDFTSQSFSD  60
FTSLFSDDNV LTDHPMDDSK FNDVCRWLND NESVGYGNMN NISSKMKRDG DLWSPDLSGV  120
SCELLPLTNS NTSLILLGNI RETDIQMSLH HLLADYGEAM ENGHKELAEV IIRSIKGNIN  180
PLGKFAHFTA NSAIIEVVPN DAQTVHIVDF DMGEWIQWPP IIEAIRQRRK ALRCTSIKKT  240
EEKSTSDQWR FEETKRRLLD YANLFGLRLQ VEEMTIEELA SELRRMKKRG KESEWLVFNC  300
MFKLPHMGKR MCRIDALEFL KLATKLLLAK YSTHKGLVTF GDGEATDISH NPNYTYSTFF  360
NKNLIYYQSI LESLEFCFPA YLAQARLAMQ FLFLAPQVFS FTWIKIWEEK RSVSYYCQEI  420
GLQGKRVSKE NLLQARELVN ERGTPFRVLE LSSCSRLVSC TLWTILCDLW DVLVSFLGRF  480
VSFGIRARVI FGTTTMEPEA SNAQTMDNNA INLILARVET MSRDVASLNV GLKKLDTDVA  540
LMSGRLERVE RQRSKTSTPQ NNFPTNTPET LHQMLYPPIA TNPTNLYSRS REQDKPNHPP  600
LNKFQQEGLG T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	4e-15	GRAS family protein