PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12384.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 419aa    MW: 46910 Da    PI: 7.8577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09130150526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ f++ G C++Gd+C FaHg
  PHU12384.1 130 VCSEFRK-GNCSRGDNCEFAHG 150
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRST LSSVDSDVFD SPKSGFGPET  60
DTLFQKFLPY NSLDDDDADP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPSR YRTEACKDGK NCKRKVCFFA  180
HTPRQLRVLP PSCHDSGSSP SPRNSPVDKK YRNLSHCCVF CHSVSASPTS TLIGMSHISP  240
PVSPSFSPPL SPAHRTQFSS PVSRYTDRFG GLGSVESSSV GQMDPTGLMS YKDALTELVS  300
SLEAMNVNHE PVSSPASAAH QAHFDGNLPW LDVNFSNNNG YDDQQQFLLS PSTPLPSPIS  360
NSRSKFYARE FPSSPISTSR LSFVEEPNNN NNNSATNKYY SDNGLGGGPD LGWVNDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-79C3H family protein