PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU12342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29294.9 Da PI: 9.3262 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.3 | 4.1e-13 | 40 | 77 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 + +++ nr+ tf kR++ + KK +EL +LC++++++ii PHU12342.1 40 FTQDHKNRKSTFVKRKASLVKKISELAILCGIKACMII 77 567899*******************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MVHSLLLLGE VDFWFSIIRP SHLTKFLDLD MRRAKINMEF TQDHKNRKST FVKRKASLVK 60 KISELAILCG IKACMIIDGG ITDQDISQHD QIWPNDPEQV HELINLYKAQ PLQGRSKRAK 120 TLSNFFENQK KKVEVKAENY PTWDSRFDYL SEKELRNLAC VLEKRIENAK GKAGFLKRTN 180 IGSSSLLSRQ EILDYTELMN YNNNLMNQTT SGWPSIDYNF FQANIPTGVN SMGVGWIIDL 240 LLPLIINLTM QIIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-19 | M-type_MADS family protein |