PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU12026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 19117.5 Da PI: 10.7453 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.4 | 3.8e-18 | 18 | 62 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +s+ qvtfskR g++KK +EL+ LC++e+ +++fs++ k+y + PHU12026.1 18 KESKLQVTFSKRCVGLFKKTSELCMLCGVEIVIVVFSPSKKVYSF 62 56788**************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MQRRSKGLQR IDIAKMQKES KLQVTFSKRC VGLFKKTSEL CMLCGVEIVI VVFSPSKKVY 60 SFGHPSVELL VDRFLGRNLP PPNNKGRHNH LLVNHRNAGL RELNKKVMDM EEMFRMEKAR 120 GESILDIRRR ANGGWWEAPI NALNLSQLQQ LMEAKKFLKL DVEKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-43 | M-type_MADS family protein |