PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12006.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10438 Da    PI: 9.4049
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-17959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ++ie+ + rq t+sk +    KKA EL +LCd++va+++fs+t+++  yss
  PHU12006.1  9 EKIEDPTSRQQTYSKLKDRFVKKADELAILCDTDVALLMFSPTDQVTSYSS 59
                579*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    
MGRNKRVMEK IEDPTSRQQT YSKLKDRFVK KADELAILCD TDVALLMFSP TDQVTSYSSR  60
GSVEDIMLRV VNRYGNPYRQ YVYFNMTNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-20MIKC_MADS family protein