PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12000.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 435aa    MW: 49221.9 Da    PI: 5.4295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.22.3e-95434221373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                 l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL ++ +r +++  +   +s+ +     + +++++l  ++++ P+++f++ +
  PHU12000.1  43 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISKASRVCPNATNFHGSSNLE----RRLMSVTELagYVDLIPWHRFGFCA 137
                 5799***************************************************777766655444444....34444444466************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....vakrledl 189
                  N+aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfef+v+    + + l++l
  PHU12000.1 138 SNSAIYKAIEGQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVppfLNVSSEEVGQRLANFARFREVPFEFHVVedlnYDTFLSQL 236
                 ************************************************988755557889999***********************9776555578899 PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                 ++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d+ ns+++  r++ +++y +  fd+le+ lp++s++r  +
  PHU12000.1 237 SPSTLQLRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKDLNPCIVTIVDEDCDLgNSSTLTSRIATCFNYLWIPFDTLETFLPKDSRQRLDY 335
                 *******************99999876643332447*************************************************************** PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 E+  +g +i+n++  eg++r+er e+ +k ++r+e++GF +vp+se++ k++k+ll +++ ++g++ +ee++ lvl+Wk+++ v +++W
  PHU12000.1 336 EAD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGFISVPFSEETIKEVKSLLDEHAsGWGMK-KEEHDMLVLTWKGHNSVYATSW 422
                 ***.********************************************************666555.45677899******99999999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MKAEMRGTST TIPLQNSSLF NNPQSSLAGA LQGCIGSLDG ACLEKLLLHC ASALENNDVT  60
LAQQVMWVLN NLASSNGDPN QRLTSWFLRA LISKASRVCP NATNFHGSSN LERRLMSVTE  120
LAGYVDLIPW HRFGFCASNS AIYKAIEGQT KVHILDFSIT HCMQWPTLID AIAKRPEGPP  180
SLRISVPSWR PQVPPFLNVS SEEVGQRLAN FARFREVPFE FHVVEDLNYD TFLSQLSPST  240
LQLRDDEALV VNCQNWLRYL HDDEQIKGAI SSRDIFLDRV KDLNPCIVTI VDEDCDLGNS  300
STLTSRIATC FNYLWIPFDT LETFLPKDSR QRLDYEADIG HKIENIIGFE GNQRIERLES  360
CNKFSQRMEN SGFISVPFSE ETIKEVKSLL DEHASGWGMK KEEHDMLVLT WKGHNSVYAT  420
SWVIIPPHMD MRIHE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-124GRAS family protein