PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU11538.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 1113aa MW: 122899 Da PI: 6.6266

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU11538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.1	5.9e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ PHU11538.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLL 229 99***************************9545444.38*********************************************..5688889 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PHU11538.1 230 LGIRRA 235 ***997 PP
2	Auxin_resp	119.5	2.7e-39	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PHU11538.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343 79*****************************99879******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence
MKTPANGAGV QQHTANGNPA EVEKKSINSE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH 180 DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGM FKRTMPWLGD DFGMKDPQGL 420 PGLSLVQWMN MQQNPSLANS MQPNYLHSLS GSVLQNVGSG ADLSRQLGLP APQLPLQNTL 480 QFGSQRPTQQ GQQLDQLQKL PATTLTPAGS IMQSQQQLSD ISQQSRQSLI NQSVPTNHVQ 540 AQLLQVRSLV QSQNVLQHQQ SFQNQLQRNL TQNLPQQQQI MNQTQQQSFM PPQPSDPLNQ 600 TLHFSDSQLQ MQLLQKLHQQ QQSLLAQQSL LQQPSQLGPI QDQQKQLLDV SQNFSRSLAT 660 SQMLDMPQTT STSTSLSQPQ IAQQQVTTNN SQSNLCFAQP LKLQQQHQHQ QQPGILPELS 720 GQVGQVLPPT TNQLSANCSS LLTGAAGGGQ SVVTDDIPSC STSPSTNNCQ NAVQPIMNGR 780 IHRGTVAADE ANQSSLPLLS SSGLEAISPN RNLVKDLQQK SDGKPSLNIS KSQNHGFLTP 840 QTYLNTAVPQ MDYLDSSSSA TSVCFSQNDV QLQQTTNPMS FSSQPVVFRD SQDGEVQGDP 900 RNNVAFGANM DNQLGISMMP DSLITNSLVG SRKDVSNNIS SGGGMLSSYE NPKDAQPELS 960 SSMVSQSFGV PDMAFNSIDS TINDGSFMNR GAWAPPPQMT RMRTYTKVYK RGAVGRSIDI 1020 TRYLGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI 1080 KILSPQEVQQ MSLDGDFGNV QNQACSSSDG GNV

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence

MKTPANGAGV QQHTANGNPA EVEKKSINSE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGM FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSLANS MQPNYLHSLS GSVLQNVGSG ADLSRQLGLP APQLPLQNTL  480
QFGSQRPTQQ GQQLDQLQKL PATTLTPAGS IMQSQQQLSD ISQQSRQSLI NQSVPTNHVQ  540
AQLLQVRSLV QSQNVLQHQQ SFQNQLQRNL TQNLPQQQQI MNQTQQQSFM PPQPSDPLNQ  600
TLHFSDSQLQ MQLLQKLHQQ QQSLLAQQSL LQQPSQLGPI QDQQKQLLDV SQNFSRSLAT  660
SQMLDMPQTT STSTSLSQPQ IAQQQVTTNN SQSNLCFAQP LKLQQQHQHQ QQPGILPELS  720
GQVGQVLPPT TNQLSANCSS LLTGAAGGGQ SVVTDDIPSC STSPSTNNCQ NAVQPIMNGR  780
IHRGTVAADE ANQSSLPLLS SSGLEAISPN RNLVKDLQQK SDGKPSLNIS KSQNHGFLTP  840
QTYLNTAVPQ MDYLDSSSSA TSVCFSQNDV QLQQTTNPMS FSSQPVVFRD SQDGEVQGDP  900
RNNVAFGANM DNQLGISMMP DSLITNSLVG SRKDVSNNIS SGGGMLSSYE NPKDAQPELS  960
SSMVSQSFGV PDMAFNSIDS TINDGSFMNR GAWAPPPQMT RMRTYTKVYK RGAVGRSIDI  1020
TRYLGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI  1080
KILSPQEVQQ MSLDGDFGNV QNQACSSSDG GNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein