PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10654.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 703aa MW: 78031.4 Da PI: 6.4487

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	114	138	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C+y d+C+F+H+ PHU10654.1 114 ICPEVAKSGkvsACPYNDKCRFSHD 138 599999999999************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MENETLMDQS PAAANPSPPE QRENPLQPPS STTDDGGVTQ EFRTAEELVA KAIAPVKREY 60 LRPPPSRSSN YNNTVGVEND DVAEAKSAPI IKDKKSKRQM KRERRQELKS PLHICPEVAK 120 SGKVSACPYN DKCRFSHDVE AFKAEKPADI EGSCPFLIYE GPCPYGLACR FAGTHRDDVS 180 APTENLPVKS SELNFFNKDT QKLLWKNKMK FPDTESTLKL LGLKGNPKDK TLGGKGENGQ 240 VVPKEPATDT KTDNNEVAKV ANDSIIPFIS PEDDADENNL ADDTRPLKKA KSSVNEICSS 300 QVSSGSSVQE GILDSSCDVN KLEPAADTVT DSDKSLKLHP REKKLIDFRD KLYLAPLTTV 360 GNLPFRRVCK VLGADVTCGE MAMCTNLLQG QASEWALLRR HSSENLFGVQ ICGAYPDTIT 420 KTVELIEQEC SVDFIDINMG CPIDIVVNKG AGSALLTKPM RMKSVVEAAS LTVGTPVTIK 480 VRTAYFEGKN RIDSLIADMG NWGATAVTIH GRSRQQRYSK LADWDYIYQC VCKAPKSLQV 540 LGNGDVFSYV DWNKHKTECP ELSTCMIARG ALVKPWIFTE IKEQRHWDIT SGERLDILKD 600 YARFGLEHWG SDSKGVETTR HFLLEWLSYT CRYVPVGLLD VIPQRINWRP PSYYGRDDLE 660 TLMASDSAAD WVRISEMLLG KVPSGFSFAP KHKSNAYDRA ENG

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MENETLMDQS PAAANPSPPE QRENPLQPPS STTDDGGVTQ EFRTAEELVA KAIAPVKREY  60
LRPPPSRSSN YNNTVGVEND DVAEAKSAPI IKDKKSKRQM KRERRQELKS PLHICPEVAK  120
SGKVSACPYN DKCRFSHDVE AFKAEKPADI EGSCPFLIYE GPCPYGLACR FAGTHRDDVS  180
APTENLPVKS SELNFFNKDT QKLLWKNKMK FPDTESTLKL LGLKGNPKDK TLGGKGENGQ  240
VVPKEPATDT KTDNNEVAKV ANDSIIPFIS PEDDADENNL ADDTRPLKKA KSSVNEICSS  300
QVSSGSSVQE GILDSSCDVN KLEPAADTVT DSDKSLKLHP REKKLIDFRD KLYLAPLTTV  360
GNLPFRRVCK VLGADVTCGE MAMCTNLLQG QASEWALLRR HSSENLFGVQ ICGAYPDTIT  420
KTVELIEQEC SVDFIDINMG CPIDIVVNKG AGSALLTKPM RMKSVVEAAS LTVGTPVTIK  480
VRTAYFEGKN RIDSLIADMG NWGATAVTIH GRSRQQRYSK LADWDYIYQC VCKAPKSLQV  540
LGNGDVFSYV DWNKHKTECP ELSTCMIARG ALVKPWIFTE IKEQRHWDIT SGERLDILKD  600
YARFGLEHWG SDSKGVETTR HFLLEWLSYT CRYVPVGLLD VIPQRINWRP PSYYGRDDLE  660
TLMASDSAAD WVRISEMLLG KVPSGFSFAP KHKSNAYDRA ENG