PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU10375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23542.3 Da PI: 10.6469 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++LC++e+ +i+fs+ k++ + PHU10375.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIVIIVFSPGHKVFSF 63 6678999********************************9999877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MAKKTSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIV IIVFSPGHKV 60 FSFGHPNVES IINRFLTRNP TSSSSTTCQL VEAHRNANVR ELNAQLTGIL NQLEFEKKRE 120 VEIEKIKKAK IGKNWWEGPV NELGLGELEQ LKLGMEDLKK NVTKQMQKII FEASNTPAFF 180 LGGSSSNRGQ VDAKNIKGLG LSMATNGPTS FP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-54 | M-type_MADS family protein |