PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10224.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 310aa    MW: 35316 Da    PI: 8.1656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.6e-121452644
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +  r+ tf kR+ g+lKK +E  +LC+++ ++i+++++g
  PHU10224.1 14 EKARNATFKKRKDGLLKKLYEFTTLCNVDGLMILYGPNG 52
                567999*******************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRAKLKMEL ICKEKARNAT FKKRKDGLLK KLYEFTTLCN VDGLMILYGP NGSDPEIWTN  60
SSGNSSSSSS SSLQQEEIQK LIDQYKKESN LQSGSTKTFD LSDYFVDRNK KVEEELMKLR  120
KMNMEKRYPS WSGSMDRLSE IELRQVLTSL DYKVAEVKSR INSVRGNFPR EYLMGGETTR  180
LSQFTHMVQG GIELGGYNYE QLLQVPIYPY CNYSHQEMMM LTRTENNWQY NNNGASSSST  240
SGGIGNSNMM CAALYEATTT HNMMGNNQLT YGAAAPTILP PPPCIIFPMS QMQHSWNKNE  300
QDDNVKFLPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-19M-type_MADS family protein