PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU10150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 319aa MW: 34319.6 Da PI: 6.5132 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.1 | 7.2e-09 | 152 | 177 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k e Cr + +GtC++G++C+F Hg+ PHU10150.1 152 KSETCRWWEDFGTCRFGSKCRFVHGK 177 6789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence |
MEFFYGSSND SFDGDVSPII GRSRFYHGSK SQILDPYASS DSTGSNIVSP LARYLCPTSP 60 VPFTSDSPKR RSLNSGSRSG SGGGIVSRSP LASIENIEIP PVFRNPVKVE EDVVVMDGIL 120 VEPKHGVRGK SSPSTSDSGG RLTSGSENSF HKSETCRWWE DFGTCRFGSK CRFVHGKEDL 180 RPTAFANRNQ SEALYSRSYS SGSSSYGPRG RSVHHQVHSA APTPTEAAAA AMTTPTTTSN 240 VKKGDKEPSS SESSTTSIST IAISGTDWSP LDDNIEVTLP SSGEKCVSRD DVDAHIRTVL 300 YGPSGRKRLP VFADFDEEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-06 | C3H family protein |