PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09847.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 442aa MW: 50626.3 Da PI: 5.7844

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.2e-12	67	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+k + g ++++e Aa+ ++ a++k++g PHU09847.1 67 SIYRGVTRHRWTGRYEAHLWDkGTWNSnqKKKGKQ-GAYDSEEAAARTYDLAALKYWG 123 57*****************88886665556666.******************98 PP
2	AP2	52.6	1.1e-16	166	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++ t eeAa+a++ a+ +++g PHU09847.1 166 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYSTQEEAAAAYDMAAIEYRG 217 89**99*******99654...4***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKLKLKPKP KPKLRPKRAS RAKRIANADS 60 SPTKRSSIYR GVTRHRWTGR YEAHLWDKGT WNSNQKKKGK QGAYDSEEAA ARTYDLAALK 120 YWGPTTILNF PVETYIKEFE EMHRLNKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW 180 EARIGRVYGN KYLYLGTYST QEEAAAAYDM AAIEYRGPNA VTNFDISRYA DWLKTLREPD 240 LLSQMENTES SNEVQSDEVI VQYQPVQQEE NQEDFMQEEL AFEPLFVPKL EFTPALDSDE 300 VTQPKVLKLE FAPKMESAAE IIKGKGYQEE DDYPWSMYLD NTFGSFQVSD FCLDKPADLM 360 DLFNNTGFDN NINFNLYEQS REQEFNNLDL FSDSMIIDMV EGNNEEVRNN PSISPTSSTA 420 VSRTTSISSD MKDVGGWTSS TK

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKLKLKPKP KPKLRPKRAS RAKRIANADS  60
SPTKRSSIYR GVTRHRWTGR YEAHLWDKGT WNSNQKKKGK QGAYDSEEAA ARTYDLAALK  120
YWGPTTILNF PVETYIKEFE EMHRLNKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW  180
EARIGRVYGN KYLYLGTYST QEEAAAAYDM AAIEYRGPNA VTNFDISRYA DWLKTLREPD  240
LLSQMENTES SNEVQSDEVI VQYQPVQQEE NQEDFMQEEL AFEPLFVPKL EFTPALDSDE  300
VTQPKVLKLE FAPKMESAAE IIKGKGYQEE DDYPWSMYLD NTFGSFQVSD FCLDKPADLM  360
DLFNNTGFDN NINFNLYEQS REQEFNNLDL FSDSMIIDMV EGNNEEVRNN PSISPTSSTA  420
VSRTTSISSD MKDVGGWTSS TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-98	AP2 family protein