PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09786.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 701aa MW: 78195.2 Da PI: 6.739

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	130	230	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + ++el PHU09786.1 130 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR--DGNGEL 224 99************************999543..445568********************************************5..468888 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r PHU09786.1 225 RVGVRR 230 *998 PP
2	Auxin_resp	101.6	1e-33	256	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg+ d+++ +W++SkWrsLk PHU09786.1 256 ASHAITTNTRFVVYYKPRT--SQFIVGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGTGDISS-QWSESKWRSLK 335 789*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MVLVESYRGA SVARSQNTGM GSEDLYTELW KACAGPLVDV PRNGERVYYF PQGHIEQLEA 60 STNQAVNQQI PQFNLSSKIL CRVVHIQLLA EADTDEVYAQ ITLHPEAEQE EPSKPDPCLP 120 DLPKRTVHSF CKILTASDTS THGGFSVLRK HANECLPQLD MTQATPTQDL VAKDLHGYEW 180 RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRDG NGELRVGVRR LARQQSPMPQ 240 SVISSQSMHL GVLATASHAI TTNTRFVVYY KPRTSQFIVG LNKYLEAVSH GFSVGMRFRM 300 RFEGEDSPER RFTGTIVGTG DISSQWSESK WRSLKIHWDE PASMVRPDRV SPWEIEPFVA 360 PTSGDVAQPG IKSKRPRPLD LPHTEIAVAS ASSPFWYPGS GPTLEVSHLG SITEVQSHDN 420 QLFWSSKQNS SLSNGVSNTS CRTHISGAWQ HSILENGSLN LLRDSIEDNK QLITRSALLD 480 YGSPMSSRAS NGLLHDLVDR GNKREISSSC RLFGIDLRNS NNTPTKAKEI LGPNVASSSA 540 DQAPMVPDKS DVDKDQCVEH LNHSDEKEQV PLEALPKDTH KQGLTSSRTR TKVQMQGVRV 600 GRAVDLTALS GYDNLISELE KIFDIKGELC PRNKWEVVYT DDEGDMMLVG DDPWPEFCNM 660 VRRIFIYSSE EVKKMTPRCK LPILSVEGEA TMPSVDSEVK P

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MVLVESYRGA SVARSQNTGM GSEDLYTELW KACAGPLVDV PRNGERVYYF PQGHIEQLEA  60
STNQAVNQQI PQFNLSSKIL CRVVHIQLLA EADTDEVYAQ ITLHPEAEQE EPSKPDPCLP  120
DLPKRTVHSF CKILTASDTS THGGFSVLRK HANECLPQLD MTQATPTQDL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRDG NGELRVGVRR LARQQSPMPQ  240
SVISSQSMHL GVLATASHAI TTNTRFVVYY KPRTSQFIVG LNKYLEAVSH GFSVGMRFRM  300
RFEGEDSPER RFTGTIVGTG DISSQWSESK WRSLKIHWDE PASMVRPDRV SPWEIEPFVA  360
PTSGDVAQPG IKSKRPRPLD LPHTEIAVAS ASSPFWYPGS GPTLEVSHLG SITEVQSHDN  420
QLFWSSKQNS SLSNGVSNTS CRTHISGAWQ HSILENGSLN LLRDSIEDNK QLITRSALLD  480
YGSPMSSRAS NGLLHDLVDR GNKREISSSC RLFGIDLRNS NNTPTKAKEI LGPNVASSSA  540
DQAPMVPDKS DVDKDQCVEH LNHSDEKEQV PLEALPKDTH KQGLTSSRTR TKVQMQGVRV  600
GRAVDLTALS GYDNLISELE KIFDIKGELC PRNKWEVVYT DDEGDMMLVG DDPWPEFCNM  660
VRRIFIYSSE EVKKMTPRCK LPILSVEGEA TMPSVDSEVK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	374	378	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein