PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09384.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 480aa MW: 53545.7 Da PI: 5.3893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	9e-14	303	346	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri+++++ Lr l+P+ + K++K++iL A++YI++Lq PHU09384.1 303 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 346 57*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MERALECLRP LVDSKNWEYC VVWKLGDDPS RFIEWKGCCC SGANGFDVNV KKENGGKQKV 60 TALCRDIQVR HPIRTKACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA EISNSSLLHD 120 LMGTLVLIPV SGGLVELYNS ELIYKDQKTI NFIINCFKLG SEEANSSIAR KEDQVLVFFP 180 YEKLNFTAPL LQYATSFPST APHIFQVSES SANPSIQGSS TGSTPSNELT LCHSPSDHLS 240 QNIPLNQSTE GYFEHTELQC SGNLSRVEAT AFPWKQENYI VAGDMFAMGK KRQKGPYQSK 300 NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKMK LYETELNEIE 360 AEVTNNEAAE MVLSDMTEIS KVTGPTNEKT QSSNTTNRTR MEVEVNQIDA RKFLLNFSGS 420 HKTGRFTQLM EAMSYLGLEI VNVSFTSSGG EILSIFIAEA NVDNVLDSQK LRSSLIELTS

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MERALECLRP LVDSKNWEYC VVWKLGDDPS RFIEWKGCCC SGANGFDVNV KKENGGKQKV  60
TALCRDIQVR HPIRTKACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA EISNSSLLHD  120
LMGTLVLIPV SGGLVELYNS ELIYKDQKTI NFIINCFKLG SEEANSSIAR KEDQVLVFFP  180
YEKLNFTAPL LQYATSFPST APHIFQVSES SANPSIQGSS TGSTPSNELT LCHSPSDHLS  240
QNIPLNQSTE GYFEHTELQC SGNLSRVEAT AFPWKQENYI VAGDMFAMGK KRQKGPYQSK  300
NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKMK LYETELNEIE  360
AEVTNNEAAE MVLSDMTEIS KVTGPTNEKT QSSNTTNRTR MEVEVNQIDA RKFLLNFSGS  420
HKTGRFTQLM EAMSYLGLEI VNVSFTSSGG EILSIFIAEA NVDNVLDSQK LRSSLIELTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	295	GKKRQKG
2	290	309	KKRQKGPYQSKNLVTERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	8e-47	bHLH family protein