PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU09352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23326.5 Da PI: 9.6908 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 10 | 59 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk nr vt+skRr+g++KKA+ELSvLCd+++++++fs+tg+l +s PHU09352.1 10 KRIENKANRGVTYSKRRKGLIKKAYELSVLCDTDISLLMFSPTGRLTSFS 59 79*********************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MMGRAKIEIK RIENKANRGV TYSKRRKGLI KKAYELSVLC DTDISLLMFS PTGRLTSFSP 60 KQRMIRGTNP AVAASTTSQI RQELKQEINA LLQQIHVAEE KLSMYEPDPG KMTSMEELEA 120 YGPKFQNGSK RRESNEADLL AYDDAFNQPQ SFDSSVNYGT TSERNNMFST IMVPSNIKGS 180 SSSLNVEKIQ APNDNSILSW PYISHFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 8e-34 | MIKC_MADS family protein |