PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09324.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 584aa MW: 66848.8 Da PI: 9.949

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.5	6.1e-15	18	74	3	55
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 k ++t+eq+e+Le+l++++ +ps +r++L + + + + +q+kvWFqNrR k+ PHU09324.1 18 KYVRYTPEQVEALERLYHECLKPSSLRRQQLIRDCpipsNSKPKQIKVWFQNRREKQ 74 5678*****************************99999999*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MMEVTSSCKD KLGMVSGKYV RYTPEQVEAL ERLYHECLKP SSLRRQQLIR DCPIPSNSKP 60 KQIKVWFQNR REKQLKESLR LQAVNRKLTA MTKLLMEENG RLQKQFLVIG HLDYYSVSTR 120 LVYVLIAVSV EFCIICDSGY SGNMEEYSVT TKEQNLVTEV FIAKLDRSLY APCGRTKGHL 180 YSDCIAAILM PSIYWYYASI LAVKATKVLC YHLYEEKRVN RKEYKLARKE AKSAVTAAKT 240 AAFESLYAGL QGKGGEKKLF RLAKARERKG RDLDQVRCIK GEDGRVLVED GHIKKRWQSY 300 FHRLLNDEGD RAILLGELEH SEECRAFSYC RRFKVEEVRQ AVRRMRREEE TTRAMAWISF 360 PNLLPTFLVK EALFSLALTV GTPIHFDMTT INKTRPEYAK VKVLVDLMAK LPNHVRMDIE 420 DENSMTTFPS IAMNANFRGI IGSEKNKNGQ VKRAKSQQQQ QPTCSFPKRL TNGKIVGNPE 480 VWNQVTSRKG KTNGTQSSQA VNCSNETLRS QNKYAGVEEL RGVDEDNIPL IEDRDEEDNS 540 TNWEQVSREE DMSNSKAKNL KGKSSKAPQA SKMGLRRGPK PSVK

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MMEVTSSCKD KLGMVSGKYV RYTPEQVEAL ERLYHECLKP SSLRRQQLIR DCPIPSNSKP  60
KQIKVWFQNR REKQLKESLR LQAVNRKLTA MTKLLMEENG RLQKQFLVIG HLDYYSVSTR  120
LVYVLIAVSV EFCIICDSGY SGNMEEYSVT TKEQNLVTEV FIAKLDRSLY APCGRTKGHL  180
YSDCIAAILM PSIYWYYASI LAVKATKVLC YHLYEEKRVN RKEYKLARKE AKSAVTAAKT  240
AAFESLYAGL QGKGGEKKLF RLAKARERKG RDLDQVRCIK GEDGRVLVED GHIKKRWQSY  300
FHRLLNDEGD RAILLGELEH SEECRAFSYC RRFKVEEVRQ AVRRMRREEE TTRAMAWISF  360
PNLLPTFLVK EALFSLALTV GTPIHFDMTT INKTRPEYAK VKVLVDLMAK LPNHVRMDIE  420
DENSMTTFPS IAMNANFRGI IGSEKNKNGQ VKRAKSQQQQ QPTCSFPKRL TNGKIVGNPE  480
VWNQVTSRKG KTNGTQSSQA VNCSNETLRS QNKYAGVEEL RGVDEDNIPL IEDRDEEDNS  540
TNWEQVSREE DMSNSKAKNL KGKSSKAPQA SKMGLRRGPK PSVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	5e-44	HD-ZIP family protein