PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09174.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 486aa MW: 53346.4 Da PI: 9.4293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHU09174.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.6	0.00043	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + PHU09174.1 162 WKCEKCSKRYAVQSDWKAHSKIC 184 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MIKGMLGDDS MSNLTSASND ASISSSNYRT EIGSVRYPQQ SLVAPAQIQT QPAAANKKKR 60 NLPGNPDPEA EVVALSPRSL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK 120 EVKKKVYVCP EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH 180 SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAEESSRT IIPPPNPLLG SASSTSHHLN 240 LHALQNFQLK QEQQQQSNFN LVSHPSNDLS FQLFVQNPNN SSSNIFGGVA SAHMSATTLL 300 QKAAQIGVTS SAAANNMSTT SFFSPTTTSS TTTTGMVAAA AEGGGVDLAS HEYHQFETNI 360 SNTGFVTGQG LASYGNNNNN KASGSTFHFG ASVTPGFMEQ VHDIQNMMAT NFDEGFGGGT 420 HLMRGGKENN EGLTRDFLGL RAFPRHRDFL NTTTAAALHH QMRSSSATAA SFDQNHQNQK 480 ESQWQN

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MIKGMLGDDS MSNLTSASND ASISSSNYRT EIGSVRYPQQ SLVAPAQIQT QPAAANKKKR  60
NLPGNPDPEA EVVALSPRSL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK  120
EVKKKVYVCP EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAEESSRT IIPPPNPLLG SASSTSHHLN  240
LHALQNFQLK QEQQQQSNFN LVSHPSNDLS FQLFVQNPNN SSSNIFGGVA SAHMSATTLL  300
QKAAQIGVTS SAAANNMSTT SFFSPTTTSS TTTTGMVAAA AEGGGVDLAS HEYHQFETNI  360
SNTGFVTGQG LASYGNNNNN KASGSTFHFG ASVTPGFMEQ VHDIQNMMAT NFDEGFGGGT  420
HLMRGGKENN EGLTRDFLGL RAFPRHRDFL NTTTAAALHH QMRSSSATAA SFDQNHQNQK  480
ESQWQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	C2H2 family protein