PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU09145.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 347aa    MW: 38849.9 Da    PI: 7.7116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU09145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07122141626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f++ G+Ck Gd C +aHg
  PHU09145.1 122 CPEFRK-GQCKKGDACEYAHG 141
                 ******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MMMIGRSPHS HPTVQVPPWD VMDDRTVDVH SPFSVSPDSA FDALTALQRY LPSNVNDVMF  60
DSDGLDIPVD AFSCDNFRMY EFKVRKCARG RSHDWTECPY AHPGEKARRR DPRKYHYSGT  120
SCPEFRKGQC KKGDACEYAH GVFECWLHPA RYRTQPCKDG THCHRRVCFF AHTPEQLRVL  180
PQNSPRSHAE LLDSFDGSPS RLGFESFSSS PPYDSPPVTP RGSLSLNSVN GLAESMRNMQ  240
IGMVRGMSST PTPTWGLQMG SPVFGSPRSP SVLRPGFMSL PTTPTRNPIG LGLAVFDQWE  300
KSCEEEPAME RVESGRDLRA KIYAKLSMEN SLDSGAPDVG WVSKLLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-120C3H family protein