PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU08490.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 364aa MW: 41265.6 Da PI: 6.6974

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU08490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.3	1.6e-28	136	196	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C++kk+v+rs++dp+v+++tY+g+H ++ PHU08490.1 136 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWAKKQVQRSDDDPTVFDVTYRGSHSCH 196 8************************99899************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDCAVNWEYK TLINELTQGI EHTKQLRAHF SSVDSTIQNQ ELLLQKILSS YEQSLLILKC 60 SVGGSMVQSS SAMMPTCGVI ESSVVSVDGS PKSDDKKRSF QDHHELIDIS KKRKLQPTWT 120 EQVKVSPKSG FEGPTDDGYS WRKYGQKDIL GAKYPRSYYR CTYRHMQNCW AKKQVQRSDD 180 DPTVFDVTYR GSHSCHHATY YVQQSTSPEK REFKKQAVYQ NRQNYSTQAL MSLRANLRVD 240 TNDLDKNEQA ACHFSFPPTF SSGLTDENHR RFQISHVDEN LIGSGYSASF VSPTTPESNY 300 FSVSSSSQMN GYGMIHNLNH SESDLTDIFS ANTSTTSSPI VGDFSLDNLE LDTNFPFNNP 360 NFFS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDCAVNWEYK TLINELTQGI EHTKQLRAHF SSVDSTIQNQ ELLLQKILSS YEQSLLILKC  60
SVGGSMVQSS SAMMPTCGVI ESSVVSVDGS PKSDDKKRSF QDHHELIDIS KKRKLQPTWT  120
EQVKVSPKSG FEGPTDDGYS WRKYGQKDIL GAKYPRSYYR CTYRHMQNCW AKKQVQRSDD  180
DPTVFDVTYR GSHSCHHATY YVQQSTSPEK REFKKQAVYQ NRQNYSTQAL MSLRANLRVD  240
TNDLDKNEQA ACHFSFPPTF SSGLTDENHR RFQISHVDEN LIGSGYSASF VSPTTPESNY  300
FSVSSSSQMN GYGMIHNLNH SESDLTDIFS ANTSTTSSPI VGDFSLDNLE LDTNFPFNNP  360
NFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	114	KKRSFQDHHELIDISKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	2e-65	WRKY family protein