PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU08480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ARF | ||||||||
Protein Properties | Length: 613aa MW: 69118.2 Da PI: 6.7663 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.4 | 2e-21 | 125 | 225 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f kvlt sd++++g +++ +k+a+e+ + +++ ++l+ +d++g + ++k+i+r++++r++lt+GW+ Fv++++L +gD++vF +++++e ++ PHU08480.1 125 FYKVLTASDTSTHGGFSIFRKHANEClppldMTQPTPAQELVAKDLHGFELRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFL--RSEKGEVRI 221 789***************************9666666779************************************************..458999999 PP EEE- CS B3 95 kvfr 98 +++r PHU08480.1 222 GIRR 225 9998 PP | |||||||
2 | Auxin_resp | 98.4 | 1e-32 | 251 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++ v+Y+Pr+ s+F+v ++k+++a+++++svGmRfkm+fe+e+++e r++Gt+vgv+d ++++W++S+WrsLk PHU08480.1 251 ASHAVATQTMLVVYYKPRT--SQFIVGLNKYLEAVNHRYSVGMRFKMHFEGEEVPESRFTGTIVGVED-SSSQWKDSQWRSLK 330 789***************6..9**********************************************.555*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence |
MANKGYFMSH NFSAEGEDEL YQELWRLCAG PLVDIPKNEE RVYYFPQGHM EQLEASTNRE 60 LNQRMPMFNL QPKILCRVLD IQLMAEQDTD EVYAQITLLP EADQVEPTNP DPSPPEPPRP 120 KVHFFYKVLT ASDTSTHGGF SIFRKHANEC LPPLDMTQPT PAQELVAKDL HGFELRFKHI 180 FRGQPRRHLL TTGWSTFVSS KRLVAGDSFV FLRSEKGEVR IGIRRLVCQP CSMPQSMISS 240 QSMHLGVLAT ASHAVATQTM LVVYYKPRTS QFIVGLNKYL EAVNHRYSVG MRFKMHFEGE 300 EVPESRFTGT IVGVEDSSSQ WKDSQWRSLK VQWDEPASVS RPDRVSPWDI EPFVAPVTSP 360 LVHPMSVKNK RHRPHNEPKV SGGNKHSLNM FFDETEANKI ASPRPAFTSF ASSQFGKQND 420 ERKGDTIISC RLFGIDLKSP SLGSAIENRT LKPANNSDNS AEGCFGNTTS AGDSQDNSGL 480 SKDQKHEHLH LAPNEVHGKQ ICSTRSRTKV HMQGVAVGRA VDLTVLSGYD ELVKELKEMF 540 DIQEELHARN KWEIVFTDDE GDVMLMGDHP WPEFCNVAKK IFICPSQDKK SFSAETKSPS 600 CLDSETTTSS LKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |