PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU08248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42375.3 Da PI: 8.4677 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.6e-12 | 4 | 26 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + elCr+f+r G C+yG+rCkF H PHU08248.1 4 RKELCRNFMR-GSCQYGERCKFLH 26 789*******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence |
MPPRKELCRN FMRGSCQYGE RCKFLHAAQQ QPKPNPFGFG SQSSNFQSTN VQQTKSNPFG 60 FGVQNNSQPR GFNDFGPKQN QYKPFENKWT RSASTNSSSS RQPDNQPVAP NHTCTDPESC 120 RRQIVEDFNN EKPLWLLTCY GHRKNGPCDI TGDVSYEELR AAAYDDAKRG QSLTSIVERE 180 RSMVNSKVAE FENLLRNPYA SPSTSAPNAQ SPFSGATPSA SSNAQSPFPG ATPNASFSGQ 240 SNFPPSASSF SQLGAILNTG ASTPPTSAFG QPSPLGNSFK TLNSSAANPF SFGNPSAAGS 300 LGFGTQVATQ SSQNPFALSN TVGSSGRNPF STSTTSPHFP NPSGGQLPSV TASPLSINLT 360 SATSTPDFSG DNSIWTKEWK IGEIPEEAPP DRYVY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 3e-69 | C3H family protein |