PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU08159.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 343aa    MW: 39527.1 Da    PI: 6.5071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU08159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07113133526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G C +Gd C FaHg
  PHU08159.1 113 ACPDFRK-GNCTRGDGCEFAHG 133
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MMIGERNRRH PTVDIPPWDD RTVNNKIQHF MEEEYSLFVH HDSDYDYYEE VDAFQDVEIP  60
VDVFACDNFR MYEFKVRRCT RGRSHDWTEC PYVHPGEKAR RRDPRKYHYS GTACPDFRKG  120
NCTRGDGCEF AHGVFECWLH PCRYRTQPCK DGGSCKRRVC FFAHSPEQLR VLSPGQGIES  180
RSDPRSEESS SPPTESPPLS PMTVSSVNSL SRSLGSNSVN EVMASLRQLQ LNRLNSMPSS  240
FNVQMNSPVF GSPRRVMTRP GYFSLPATPS GDLTRPGYRV FDTWEKGEYE EEPVMERVES  300
GRDLRVKMFE KLSKENPLDP VDPNPNSNPG PNPDVRWVSD LIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-92C3H family protein