PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU07918.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 889aa    MW: 98508.5 Da    PI: 6.1607
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU07918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+         ++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PHU07918.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysRQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENNQL 223
                 99*****************************9544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PHU07918.1 224 LLGIRRA 230
                 ****997 PP
2Auxin_resp112.83.3e-37255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F++ +nPra++seFv++++k++ka++ ++vs+GmRf+m fete+ss rr++Gt++g++dldpvrWpnS+W+s+k
  PHU07918.1 255 AAHAAATNSRFTISFNPRACPSEFVIPLAKYVKAVYhTRVSIGMRFRMLFETEESSIRRYMGTITGINDLDPVRWPNSHWQSVK 338
                 79*********************************9789*****************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    
MRVSSSGFNP QREEGGEKKC LNSELWHACA GPLVSLPHEG SRVVYFPQGH SEQVAASTNK  60
EIDGHIPNYP GLPPQLFCQL HNVTMNADVE TDEVYAQMTL QPLTPEEQKD LCLQPAELGT  120
LSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SRQPPAQELI AKDLHGNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEN NQLLLGIRRA NRPQMVLPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTISFN PRACPSEFVI PLAKYVKAVY HTRVSIGMRF  300
RMLFETEESS IRRYMGTITG INDLDPVRWP NSHWQSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FSLRLKRPWP SGLPSFPGLS NGDMTMNSQL PWLHGGMGDQ GIQSLNFQGF  420
GVNPFMQPRF DASMLGLQPD ILQAMAALDS SKLANQSLMQ FQHIPSYSAS LIQSQLLHPS  480
NSQRTLLQGF PENQLLSQAQ MLQQQLQGHQ SYDTQQQQLQ RQQLCHDQQL QEPHQALSLR  540
QDQQQTKAES QSQLSHLQVL GSIGSQQTYS DIVGNHINTS NSSSTMQNLL SSFSRNGAST  600
FLNMPETNSL VSPSSSSKRI ALESQLPSRA PYIVTQAENL MVPNTKVSDF SNLFSPLPGR  660
EVLDYQGVVD SQNNMLFGIN NDSSIIQQNG MSNLKANSPD KGSLPVPYAT STFTNTVGSE  720
FPVNSDMTSS SCVDESGVLQ SSENADQANS LAGTFVKVHK SGSFGRSLDI SKFSSYNELR  780
SELAHMFGLE GLLENPERSG WQLVFVDREN DVLLLGDDPW NEFVNDVWYI KILSPLEVQQ  840
MGKEGLDLPS AGKTQSIASN GNGNGCDDFM NRNHSFSIMN GMPLGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein