PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU07811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19886.4 Da PI: 6.9494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39 | 1.1e-12 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie + +fsk r g+ KKA+EL Cd++v +iifs+tgk y + PHU07811.1 16 KIEKRDDLYASFSKHRSGLYKKASELVRECDVDVGMIIFSPTGKPYSF 63 6777777789**********************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MENKKGKGRR KIPMKKIEKR DDLYASFSKH RSGLYKKASE LVRECDVDVG MIIFSPTGKP 60 YSFFHPTVDA IVSCFQNPDL QLSISAQLVA AHARHRVNEL NSRLEELETI KKDAVFQKNM 120 YDEVMETGQK SWWESVEEPS AEELTKFEDW LNTVGSDLQN RLNQLESGAS SSRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-24 | M-type_MADS family protein |