PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06738.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11682.9 Da    PI: 10.7653
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.4e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+ks rq+ f+kRr+g++KKA ELS+LCd++v v+i+s++g+l+e+ss
  PHU06738.1  9 KRIEDKSCRQIAFCKRRKGLMKKARELSILCDVDVGVVIISNRGRLHEFSS 59
                79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MGRRKVEIKR IEDKSCRQIA FCKRRKGLMK KARELSILCD VDVGVVIISN RGRLHEFSST  60
NRSCFAFHSG FHIHDAFVLK LNWGFLLCVR VCNIVIAMPS SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.35e-26MIKC_MADS family protein