PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU06672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 372aa MW: 42615.6 Da PI: 5.165 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.4e-06 | 89 | 112 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC f+ + G+C G +CkF+H+ PHU06672.1 89 KSILCEFYKA-GQCAKGFKCKFSHD 112 6679**7777.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence |
MPPKQSKSDI AKKQKIVEDK TFGLKNKNKS KNVQKYVQSL QQNVVPKVDP KKADAKKKKE 60 EEKAREKELN ELFKVAISQP KVPLGVDPKS ILCEFYKAGQ CAKGFKCKFS HDLNVQRKGE 120 KIDIFSDKRD EDGKGTMEEW DQETLEKVVA SKSQEYNKNK PTDIVCKYFL EAVEKKQYGW 180 FWVCPNGGKE CHYRHALPPG YILKSQMKAL LQEEADKMPI EEEIDEQRAK LTSSTPLTTD 240 LFMEWKKKKM EEREANLAKE RADRAKNDRM SGRELFMSDA SWFVDDVGAY DKYEREEEPA 300 ERQKENKDSA GGEASSSTSA QTTRDGGETS RNNEVDDNYD DDDDDFDVDE LNELEASLSK 360 TSLQINEPGS RA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-143 | C3H family protein |