PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06586.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 348aa    MW: 39543.1 Da    PI: 4.7909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10244288347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++++  ++G g+Wk+I+r+   +Rt+ q+ s+ qky
       PHU06586.1 244 SWTELEHRSFLRGLDKYGRGDWKSISRYCVITRTPTQVASHSQKY 288
                      6***************************9989***********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MVAHRGEPLE IDNWELGLQR DAGLSRRSTR IGQLSFWHPP RHGNRRDSLE ITEGREEEEQ  60
IDTVYVDLAA ERKVDIKGPK DDTKSTFHSN TGSEIEHLSV GLSDYEGEGF DFDYEKYITD  120
NTCLAAVDSV YQPDIYGCFC DIMNLIRFLN PLQELTLFML EPFLVCQKEM RTDRTCNSSF  180
WTLRRMEEEL PGKSGDDIIN YYNILLEDVE AIDSGRVPIP NYPELQSISN QNSEADVERQ  240
RGASWTELEH RSFLRGLDKY GRGDWKSISR YCVITRTPTQ VASHSQKYFK HLKAVPKKNR  300
RASILDITSA DAEAAGTSQA MPSTNNESIF LRQSTNAEQI IAVAGGVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-37MYB family protein