PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06557.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 693aa MW: 76099.1 Da PI: 7.1832

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.2e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ l PHU06557.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNYKKLVAGDSIVFL--RAENGDL 215 89**************************996555555..89*******************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ PHU06557.1 216 CVGIRRA 222 **997 PP
2	Auxin_resp	114.4	1e-37	286	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ PHU06557.1 286 AANLAASGQPFEVIYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPIRWPDSPWRLLQ 369 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MITFMDPKDK VKEIEKCLDS QLWHACAGSM VQMPSISSKV FYFPQGHSEH ACGNVDFRSS 60 IRIPSYIPCK VSAIKYMADP ETDEVFAKIR LIPVSRNEVE FDDDGVVGLN GSDNQDKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNYKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG 240 GNCMVPYGGF SSFLRDDENK LLRNGNGSNS GNMNRGKVKA ESVIEAANLA ASGQPFEVIY 300 YPRASTPEFC VKASLVKAAL QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVSDPIRW 360 PDSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPTIHL SPFSPPRKKL RLPQHPDFPL 420 DGHLPMPAFS GNHLLGPNSP FGCLPDNTPA GMQGARHAQY GLSLSDLHFN KLHSSLFPVG 480 FPPLDQAAAA PRRPLNSPTI SKPCNSENIS CLLTMGNSAH STKKSDIKKA PQLVLFGQPI 540 LTEQQISLSC SGDTVSTVRT GNSSSDGNAD KTGNVSDGSG SALNQRGLTE RSPCDIFQSE 600 PNTEIGHCKV FMESEDVGRT LDLSLLGSYE ELCRKLANMF GIDSSEMLNH VLYRDTTGAV 660 KQLGDEPFSD FMKTARRLTI LADSSSDNVG LRE

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MITFMDPKDK VKEIEKCLDS QLWHACAGSM VQMPSISSKV FYFPQGHSEH ACGNVDFRSS  60
IRIPSYIPCK VSAIKYMADP ETDEVFAKIR LIPVSRNEVE FDDDGVVGLN GSDNQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNYKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG  240
GNCMVPYGGF SSFLRDDENK LLRNGNGSNS GNMNRGKVKA ESVIEAANLA ASGQPFEVIY  300
YPRASTPEFC VKASLVKAAL QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVSDPIRW  360
PDSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPTIHL SPFSPPRKKL RLPQHPDFPL  420
DGHLPMPAFS GNHLLGPNSP FGCLPDNTPA GMQGARHAQY GLSLSDLHFN KLHSSLFPVG  480
FPPLDQAAAA PRRPLNSPTI SKPCNSENIS CLLTMGNSAH STKKSDIKKA PQLVLFGQPI  540
LTEQQISLSC SGDTVSTVRT GNSSSDGNAD KTGNVSDGSG SALNQRGLTE RSPCDIFQSE  600
PNTEIGHCKV FMESEDVGRT LDLSLLGSYE ELCRKLANMF GIDSSEMLNH VLYRDTTGAV  660
KQLGDEPFSD FMKTARRLTI LADSSSDNVG LRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein