PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06542.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 183aa    MW: 19904.1 Da    PI: 4.9837
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-0829641247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++++ + +G g+W++I+r+  k+Rt+ q+ s+ qky
       PHU06542.1 29 FLRGLEIFGRGDWRSISRYCVKTRTPAQVASHAQKY 64
                     89999******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
METGKNGIEE GDNDIIGIDR VKLHLPLSFL RGLEIFGRGD WRSISRYCVK TRTPAQVASH  60
AQKYFLHLES VNKPTRRGRP SILDITSADA ETSGVSQEVP STNNDISHPV TRIGSDLEAL  120
ITEHMDENND VNSIFYYTVS SLGAINAPEN NAAASLSAMN APQNGVSVPA QLPPFACSSN  180
FDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.12e-21MYB family protein