PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU06451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 130aa MW: 15045.1 Da PI: 8.4119 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.7 | 2.2e-11 | 15 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49 ++ien++ r vtfskR+ g+ KKA+ L d++ +i +s++gk y + PHU06451.1 15 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVNLGIISYSPNGKPYSF 64 57***********************9975267899999999999998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence |
MSERKCLGRR KIRMEKIENE TTRLVTFSKR KSGLYKKASK LVEKYDDVNL GIISYSPNGK 60 PYSFFHPTFD SVVGHFEYID TVNEEDVKRL EEWLDLVDLK LNHKLMMLEN GVASSTQAPP 120 DNAYQAYSGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-22 | M-type_MADS family protein |