PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06380.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 391aa MW: 43002.7 Da PI: 8.0947

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.3	3.6e-25	168	212	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ PHU06380.1 168 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVET 212 79****************************************996 PP
2	QLQ	48.6	2.5e-17	102	138	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+yK+++a++PvP eLl i+k PHU06380.1 102 SYFSLAQWQELELQALVYKHMLAGAPVPNELLHLIKK 138 79******************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDFNMKQWRN EQKNESSSEE VKNTAKLPRL VLDLDSSYFS SCYPHSSSAT TGFSVSCSDN 60 TDTSVLPLFV SEPPTNNKLS AFTLSPDSTV LTATKLPRME SSYFSLAQWQ ELELQALVYK 120 HMLAGAPVPN ELLHLIKKSL INSSPYYNLP QQYHHYQQAC YWGRTNMDPE PGRCRRTDGK 180 KWRCSRDVVS GHKYCERHVH RGRNRSRKPV ETTTTAAPRV GNAAASNRGS GEALRVNPAM 240 VNQGGVAPQF TLSGHAASTD LLHLNQRPME GQNDGGSNGQ ILLHFFDDWP RQQFEENDNA 300 GSMASATSLS ISMPGNPSSD VSLKLSTGDR YNSDVRVNNV ERSTWGTNHV ASMGGGPLAE 360 ALRSSMSNSS PTSVLHHLTR GNTSDASCVS T

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDFNMKQWRN EQKNESSSEE VKNTAKLPRL VLDLDSSYFS SCYPHSSSAT TGFSVSCSDN  60
TDTSVLPLFV SEPPTNNKLS AFTLSPDSTV LTATKLPRME SSYFSLAQWQ ELELQALVYK  120
HMLAGAPVPN ELLHLIKKSL INSSPYYNLP QQYHHYQQAC YWGRTNMDPE PGRCRRTDGK  180
KWRCSRDVVS GHKYCERHVH RGRNRSRKPV ETTTTAAPRV GNAAASNRGS GEALRVNPAM  240
VNQGGVAPQF TLSGHAASTD LLHLNQRPME GQNDGGSNGQ ILLHFFDDWP RQQFEENDNA  300
GSMASATSLS ISMPGNPSSD VSLKLSTGDR YNSDVRVNNV ERSTWGTNHV ASMGGGPLAE  360
ALRSSMSNSS PTSVLHHLTR GNTSDASCVS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-70	GRF family protein