PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06044.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 304aa    MW: 31472.8 Da    PI: 9.7275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-073558225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                kt++C  f+ t  C++G++C+F H
  PHU06044.1 35 KTKPCTKFFSTAGCPFGESCHFLH 58
                9*********************** PP
2zf-CCCH29.71.1e-0996121227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ f     Ck+Gd+C+FaHg+
  PHU06044.1  96 KTKLCNKFNTAEGCKFGDKCNFAHGE 121
                 8***********************96 PP
3zf-CCCH34.34e-11271295126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC +f + G C +G+rC+FaHg
  PHU06044.1 271 YKTKLCENFTK-GSCTFGERCHFAHG 295
                 9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MDLRKRSRNE GGANFNGGFK KSKPEMDSLS GVGSKTKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLGPAPASR NAPAPPMANG NAPAVKTKLC NKFNTAEGCK FGDKCNFAHG  120
EWEIGKPIVP SQEDPRAMGV GPIPGRFGAG RMEPPVSGHA ASFGTSATAK ISVDASLAGA  180
IIGKGGVHSK QICRQTGAKL AIRDHEADAS LKNIELEGTF EQISQASAMV RELISSLGPV  240
GGGPGRAPTG PGGHGRAPTG PGGPPPSMSN YKTKLCENFT KGSCTFGERC HFAHGAAEMR  300
KTGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-84C3H family protein