PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05813.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 695aa MW: 76134.2 Da PI: 6.8622

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PHU05813.1 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MTMNNPTVEP EDTFASLLEL AANNDIEAFK RWIERDLASI HEVGLWYGRQ KGSKQMVLDH 60 RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPHSKDIN GHYPIDVLVV SPNFHQVKSC LKSLLMTSAI GDCKLQVSVP TSIPNSPPCS 180 PSPEHRSPSS ALDSTSSPKS AKSNDLPVYS IPEKKEYAID SSFPDIKNDI YSSDEFRMFS 240 FKIRPCSRAY SHDWTECPFL HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGI DCNRRVCFFA HMHEELRPLY VSTGSAVPSP CVNTAAANAM 360 DFAAAMRVIP GSPSSVPVMS PSPFTPPISP SANGISSMGW AQQNVPALHL PGSFVHSNRL 420 RPSLNARGIP AADLPTYPDF DVQQQQLLNE FSCLSQHSMS SNSLNRSARP MTLTRANLED 480 YFSAESSSPR YSDQALAQAG FSPTHNSAVC SPFQQQQRSL LSPINTNFSP KNIDNPLLQS 540 SFGVPSSGRM SPRAMEPISP RSSRVSILAQ RDRQHQFRSF SSRDLGSNPS AIVGSPADTW 600 SNWGTATGKP DWAVSTEEFG RLRQSSPFKL ANNEKEPDVS WVQSLVKESP PEMMRDECDP 660 HVSGPTGTGA DLDEGSTSSS QVDQSSAWME TKNTS

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MTMNNPTVEP EDTFASLLEL AANNDIEAFK RWIERDLASI HEVGLWYGRQ KGSKQMVLDH  60
RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPHSKDIN GHYPIDVLVV SPNFHQVKSC LKSLLMTSAI GDCKLQVSVP TSIPNSPPCS  180
PSPEHRSPSS ALDSTSSPKS AKSNDLPVYS IPEKKEYAID SSFPDIKNDI YSSDEFRMFS  240
FKIRPCSRAY SHDWTECPFL HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGI DCNRRVCFFA HMHEELRPLY VSTGSAVPSP CVNTAAANAM  360
DFAAAMRVIP GSPSSVPVMS PSPFTPPISP SANGISSMGW AQQNVPALHL PGSFVHSNRL  420
RPSLNARGIP AADLPTYPDF DVQQQQLLNE FSCLSQHSMS SNSLNRSARP MTLTRANLED  480
YFSAESSSPR YSDQALAQAG FSPTHNSAVC SPFQQQQRSL LSPINTNFSP KNIDNPLLQS  540
SFGVPSSGRM SPRAMEPISP RSSRVSILAQ RDRQHQFRSF SSRDLGSNPS AIVGSPADTW  600
SNWGTATGKP DWAVSTEEFG RLRQSSPFKL ANNEKEPDVS WVQSLVKESP PEMMRDECDP  660
HVSGPTGTGA DLDEGSTSSS QVDQSSAWME TKNTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein