PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05796.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 295aa MW: 30768.9 Da PI: 9.7273

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	38	61	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H PHU05796.1 38 KSKPCTKFFSTAGCPFGESCHFLH 61 7789******************** PP
2	zf-CCCH	31	4.2e-10	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC++f Ck+Gd+C+FaHg+ PHU05796.1 99 KTKLCNRFNTAEGCKFGDKCNFAHGE 124 8***********************96 PP
3	zf-CCCH	36.4	8.7e-12	263	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +fa+ G C +Gd+C+FaHg PHU05796.1 263 KTKLCENFAK-GSCTFGDKCHFAHG 286 9*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MDFRKRSRND GVGAVNVNGG AKKYKSELDS LTSGVGSKSK PCTKFFSTAG CPFGESCHFL 60 HYVPGGYNAV AQMMKLAPAP SLRNAAAPPN SNGNAAPVKT KLCNRFNTAE GCKFGDKCNF 120 AHGEWEIGKP TIPSQEDPRA MGFGSMPGRF GGRMEPPVSG PAASFGTSAT AKISVDASLA 180 GAIIGKSGVN SKQICRQTGA KLAIRDHEAD PNLRNIELEG TFEQISQASA MVRELISSLG 240 PVGGPGRAHG NPGGPAPPIN NLKTKLCENF AKGSCTFGDK CHFAHGAAEL RKTGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-62	C3H family protein