PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05608.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 556aa MW: 63064.3 Da PI: 6.1731

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	440	490	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 r+ W+t E ++lv++v ++G g+W+ I +++ +R++ ++k+ wq++l PHU05608.1 440 RKYWSTREVLKLVEGVSEYGVGRWNDIKKMFFqssMRRSPVDLKDEWQNLL 490 678*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MQTAMDPFEY NWSTWNESAT SFQQEPEQVV AAASVYFASE QEAIGVEQLL AEPEYDDIVN 60 TLLDFNTCAF SGVPESYFKE FSASDTILTK TDCGALQRSH NEGDKTKEKF LDGLSNGDDE 120 NHCFISCEDY LLDIELEEDT PTLHDVTRDI SCVESVILEN QLVDSDGRNC GIHVLTLSGA 180 SSSSDHDATI IDNFDCMSTD KLLMVSREML GHETPVADNQ WLKPHMIVGL ENQEISEKNF 240 SFPKCSLDSS ENQGANVPPA SCRNLLTVST AFASIFTFRR KPRVQHVKRR EHIQWNSFKC 300 LSSVAGEIQL DCPDKWDSKE SAEENVKCCG MKPGISEQCL KCKPSRRGFG RRYYRRGATV 360 TSQGLGKRNF QVGFDQLIRR ERQLSKDCKA NRAHDDNIHS AEAKNDPSGT LSDQSSDDTS 420 EDDWTIGCEP RGTNKDRKHR KYWSTREVLK LVEGVSEYGV GRWNDIKKMF FQSSMRRSPV 480 DLKDEWQNLL RASCRRLQSR RGVDAKKKRR MRSIPRTVLN HVRNLAVIYP YSMQRRSRIS 540 SAESLASSSN VKSDNH

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MQTAMDPFEY NWSTWNESAT SFQQEPEQVV AAASVYFASE QEAIGVEQLL AEPEYDDIVN  60
TLLDFNTCAF SGVPESYFKE FSASDTILTK TDCGALQRSH NEGDKTKEKF LDGLSNGDDE  120
NHCFISCEDY LLDIELEEDT PTLHDVTRDI SCVESVILEN QLVDSDGRNC GIHVLTLSGA  180
SSSSDHDATI IDNFDCMSTD KLLMVSREML GHETPVADNQ WLKPHMIVGL ENQEISEKNF  240
SFPKCSLDSS ENQGANVPPA SCRNLLTVST AFASIFTFRR KPRVQHVKRR EHIQWNSFKC  300
LSSVAGEIQL DCPDKWDSKE SAEENVKCCG MKPGISEQCL KCKPSRRGFG RRYYRRGATV  360
TSQGLGKRNF QVGFDQLIRR ERQLSKDCKA NRAHDDNIHS AEAKNDPSGT LSDQSSDDTS  420
EDDWTIGCEP RGTNKDRKHR KYWSTREVLK LVEGVSEYGV GRWNDIKKMF FQSSMRRSPV  480
DLKDEWQNLL RASCRRLQSR RGVDAKKKRR MRSIPRTVLN HVRNLAVIYP YSMQRRSRIS  540
SAESLASSSN VKSDNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	508	RRLQSRRGVDAKKK
2	506	510	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-18	MYB_related family protein