PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05531.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 384aa MW: 42142.8 Da PI: 9.6204

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.5	1.5e-25	151	194	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgrsrsrk++e PHU05531.1 151 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHVHRGRSRSRKPVE 194 79***************************************987 PP
2	QLQ	39.5	1.7e-14	79	112	3	36
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 F+ aQ+q+L+ Q l++++++a++ vPpeLl ++ PHU05531.1 79 FSLAQWQELELQTLIFRHFIAGVSVPPELLHLVK 112 9****************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDFNLKQQDD ESLTTTHHHH PAKLPKLVRD FQSVVSASTD SALPLFVSQP TSTTTTTNKL 60 LSDSTTATTK FTRIGSGCFS LAQWQELELQ TLIFRHFIAG VSVPPELLHL VKKSIITSPP 120 SYYYSHPFQQ YPPHYQQALM QSGYWGRGAM DPEPGRCRRT DGKKWRCSRD VVVGQKYCER 180 HVHRGRSRSR KPVEIPTPAN NGSKNNNNNT VFHHQAFEKM ASHAPHFSLS GHSPSADAAL 240 HLNQRPLEST KKGPPFEAQK DDGKSSNGQI LRHFFVDWHR QQLQEGDNAA TSLSISMPGG 300 GVGGGGGNPS SDFSLKLSTG NDYDSGPHRV SNVERSTWGT SHQVASMGGP LAEALRSSTT 360 NSSPTSVLHQ LARGTTSDAS YIST

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDFNLKQQDD ESLTTTHHHH PAKLPKLVRD FQSVVSASTD SALPLFVSQP TSTTTTTNKL  60
LSDSTTATTK FTRIGSGCFS LAQWQELELQ TLIFRHFIAG VSVPPELLHL VKKSIITSPP  120
SYYYSHPFQQ YPPHYQQALM QSGYWGRGAM DPEPGRCRRT DGKKWRCSRD VVVGQKYCER  180
HVHRGRSRSR KPVEIPTPAN NGSKNNNNNT VFHHQAFEKM ASHAPHFSLS GHSPSADAAL  240
HLNQRPLEST KKGPPFEAQK DDGKSSNGQI LRHFFVDWHR QQLQEGDNAA TSLSISMPGG  300
GVGGGGGNPS SDFSLKLSTG NDYDSGPHRV SNVERSTWGT SHQVASMGGP LAEALRSSTT  360
NSSPTSVLHQ LARGTTSDAS YIST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	5e-62	GRF family protein