PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU04934.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 689aa    MW: 77325.4 Da    PI: 5.9363
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU04934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24114215199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++pk +a+++         ++ +   l+++d +g+ We+++i+r+k++r++lt+GW++Fv++++L +gD++vF   ++++++l
  PHU04934.1 114 FAKTLTQSDANNGGGFSVPKYCADTIfpllnyaADPPVQ--NLSVKDVHGKPWEFRHIFRGKPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RSENGKL 208
                 89*********************999*****97666666..6************************************************..4589999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PHU04934.1 209 CVGIRRA 215
                 *****97 PP
2Auxin_resp99.54.5e-33291373183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++k +Fev+++P +s++eF vk+++v++al+++++ GmRfkm feteds    ++Gt+++v+ +dp rWp+S+Wr L+
  PHU04934.1 291 AANLAASKYPFEVTFYPHSSNPEFFVKASRVKAALQIPWCSGMRFKMPFETEDSMMSWFMGTISSVQVADPHRWPDSPWRILQ 373
                 7899****************************************************999**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    
MITFMDSRDE EEKCLDSQLW HACAGTMVKM PAVNSIVFYF PQGHAEHACA NVEFRNDIRI  60
PSYIPCRVSA ITYMAEQVTD EVFAKIRLTP ISHNEVDQIV DDEIADNPDK FPSFAKTLTQ  120
SDANNGGGFS VPKYCADTIF PLLNYAADPP VQNLSVKDVH GKPWEFRHIF RGKPRRHLLT  180
TGWSNFVNEK KLVAGDSIVF LRSENGKLCV GIRRAKKGIG NGPETPFQCI PPIDNFFIPP  240
IDNLAIPPRG GYSALLKDDE NKLMRYENTN SNDEINLMNK GKVKAESVIE AANLAASKYP  300
FEVTFYPHSS NPEFFVKASR VKAALQIPWC SGMRFKMPFE TEDSMMSWFM GTISSVQVAD  360
PHRWPDSPWR ILQVTWDEPD LLQNVKCVNP WLVELVSNMS TIHFNPYAPP LQLPQRSDFP  420
HLPMPGLIRP SDFFNCLPND THVGMQGARH AQYNLSLPDL HLDRLYSSLS HVGFPPPHHV  480
IASPRTSNST TIPNPSISDD ISCLLTLGGS SQNMNKSDCE KVPQFKLFGQ LIRTEQQISQ  540
SSSGDTGSPI RAVNSSLHGH GYKKGDISEE SGTSFDHCSL PDHLPCESFQ SEKNLEMGHC  600
EVFIESEDVG RTLDLSLLDS YEELYMDLSN MSGIKISDML NHVIYRDING ATKQLGDEPF  660
REFTKTSRRL TILTDSRSDN IGVTSRDNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein