PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU04886.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 826aa    MW: 90078.2 Da    PI: 6.2593
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU04886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4111.1e-1254488072374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ +sP++kfsh+taNq
  PHU04886.1 448 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPVLYTQKLASAFQVFNGISPFIKFSHFTANQ 546
                 579*****************************************************************9999*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + +a+++ +l++e+L+v+++
  PHU04886.1 547 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAERLGLPFEFLP-LADKVGNLDPEKLNVSKR 640
                 *************************************************....***************************.6***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+
  PHU04886.1 641 EAVAVHWLQ--HSLYDVTGSDSN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVL 732
                 ********9..999999999999....**********************.899********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++s+gy++ e++g+l lgWkd  L+++SaWr
  PHU04886.1 733 AVGGPSRSGEVK-FNNWREKLQQSGFRCLSLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 807
                 ******888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    
MAKAFPLNGE NCTDTTGEKI VVGGSSTGEK LQATSKDINN VHRQGLLHGD SGKMVRKRAA  60
SDMEIQTGAG EDHRYLRRPV TIGGSHAQMS VSTSSFGHNI NNIPTTTNVS NYSTMQMLPS  120
STNLCGVTSR GPGIDTGFSN STPNLTYTDA ITSHHQLQGP QTQNDNQSPS VCVFSGLPLF  180
PPDRNRQNSG LLLQQPATAA AAAVVSSPLT TGRIDTMEDS TSATAWIDSI IKDLINSSAQ  240
VSVPQLIQNV REIIHPCNPY LASLLEYRLR SLNTGGADQN DPMECWRRKE PLPQLAGLPQ  300
QVQNSANLLQ HNILSLRDSS NNQYLNWEIA LPASHNAPVA PSVNQHQQLG GNNPTATDLS  360
FVTPPILSPQ VQQQQQEESP QSQQQAAIDL EQQKQQQSSC SLSPTSVADS SVKIKTTTPV  420
PPVPVNTYKE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF  480
GTSAQRVAAY FSEAMSARLL NSCLGIYAAL PMTSVPVLYT QKLASAFQVF NGISPFIKFS  540
HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGTSMDAL  600
EATGKRLSDF AERLGLPFEF LPLADKVGNL DPEKLNVSKR EAVAVHWLQH SLYDVTGSDS  660
NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE  720
QQLLSKEIRN VLAVGGPSRS GEVKFNNWRE KLQQSGFRCL SLAGNAAAQA TLLLGMFPSH  780
GYTLVEDNGT LKLGWKDLCL FTASAWRPNS LHVASGSRHF SRPNMD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein