PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU04447.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 731aa    MW: 80551.1 Da    PI: 5.6743
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU04447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2058113156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+  qVk+WFqN+R+++k
  PHU04447.1  58 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 113
                 688999***********************************************998 PP
2START214.83e-672524741206
                 HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                 ela +a++el+++a+ +ep+W +ss        +n++e+ ++f+++ +     +++ea+r+s+vv+m+ ++lve+l+d++ qW++ ++    ka++lev
  PHU04447.1 252 ELAVAAMEELIRLAQTGEPLWIQSSennpneVLLNEEEYARTFPRGIGpkslgFKSEASRESAVVIMNYVNLVEILMDVN-QWTNFFTgivsKATILEV 349
                 57899********************77777666788888888888888********************************.****************** PP

                 ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 +s+g      galq+m+ae+q+++plvp R+ +fvRy++q+ +g w++vdvSvd+ ++ +    v R++++pSg++i++++ng+skvtw+ehv++++r 
  PHU04447.1 350 LSTGvagnynGALQVMTAEFQVPTPLVPtRENYFVRYCKQHADGAWAVVDVSVDNLRSTS----VSRCRRRPSGCVIQELPNGYSKVTWIEHVEVDDRA 444
                 *********************************************************975....8********************************** PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                 +h+++r+lv sgla+gak+wvatl+r ce+
  PHU04447.1 445 VHSIYRPLVDSGLAFGAKRWVATLERICER 474
                 ****************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MFQHNMFDSH NFLLDVTRKT PENELDLIRD DEFESKSGTD IMEAPSGDDQ DPNKRPKKKQ  60
YHRHTQHQIQ ELESFFKECP HPDDKQRKDL GKRLGLEPLQ VKFWFQNKRT QMKSQHERHE  120
NTQLRNENEK LRAENIRYKE ALTTATCPNC GGPATIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLNYPQLPS LGPPTRSPLD LGITAANLGH QLGEMFTTST SAGDLLRSIS  240
GPTDADKPII IELAVAAMEE LIRLAQTGEP LWIQSSENNP NEVLLNEEEY ARTFPRGIGP  300
KSLGFKSEAS RESAVVIMNY VNLVEILMDV NQWTNFFTGI VSKATILEVL STGVAGNYNG  360
ALQVMTAEFQ VPTPLVPTRE NYFVRYCKQH ADGAWAVVDV SVDNLRSTSV SRCRRRPSGC  420
VIQELPNGYS KVTWIEHVEV DDRAVHSIYR PLVDSGLAFG AKRWVATLER ICERLASVMA  480
SNIPTGDVIT SPEGRKSMLK LAERMVMSFC AGVGASTAHT WTTLSGSGAD DVRVMTRKSI  540
DDPGRPPGIV LSAATSFWLP VPTKRIFDFL RDENSRNEWD ILSNGGLVQE MAHIANGRDS  600
GNSVSLLRVN SGNSTQNNML ILQESCLDST GCYVIYAPVD IAAMNVVLSG GDPDYVALLP  660
SGFAILPDGS SNASSAENTN VAGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTVE  720
RIKAAIQGEN A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein