PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU04308.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 611aa MW: 70414 Da PI: 6.7976

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU04308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63.7	6.6e-20	11	146	1	126
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg.... 88 a+g+kdrhsk++T+ g++dRRvRls ++a++f+ +qd+LG+d++sk+i+WL+q++++ai +l +t + +s++++ ++++++s++ + + PHU04308.1 11 ATGRKDRHSKVSTASGPKDRRVRLSPNTAIQFYNVQDRLGYDRPSKAIDWLIQESQRAINALEKTpfqvlsrKIDSSNKALNWRNVKSEDGQFALeqsw 109 589**************************************************************8888887666666664444444444222224444 PP TCP 89 kaaksaakskksqksaasalnlakesrakararare.rt 126 +a k+++ ++ +++s++ ln + + +a++ + + ++ PHU04308.1 110 SADKKTELEELARHSSK--LNSSMQYSADQFPKGSYkEQ 146 44444445555555555..66655555555555444344 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MEVHGSRIVR ATGRKDRHSK VSTASGPKDR RVRLSPNTAI QFYNVQDRLG YDRPSKAIDW 60 LIQESQRAIN ALEKTPFQVL SRKIDSSNKA LNWRNVKSED GQFALEQSWS ADKKTELEEL 120 ARHSSKLNSS MQYSADQFPK GSYKEQSSKV CPADVKIQSL NDNQIGNLNL FSSEEDSKIQ 180 SFCELQTHSK GHFHSETKEL SANDAKLRSF CEFQNHQQGH FHSETEKQSP NDAKIQYFCE 240 LQTYQQGHFY SETKKQSPSD AKFQPFRELQ TYQQGHFHSE TKKQSPNDAK IQSFYEMQTY 300 QQGHFHSETK EQSANDAKIP SFCEFRTHQQ DHFHSETKSE STNDAKIQSF GELQTYQQGH 360 FHSETEKQSP GDAKMQSFRG LQTYQQGHFH SETKEQSVND AKIQSFRELQ TYQQGHFHSE 420 TEKQSPNDAK IQSFSELQTY QQGHFHSETE KQSPSDAKIQ SFCELQTYQQ GHLHSETKKQ 480 PPIDPKIQSF CEMQTYPQGH FHSETKNQSA ILSNFFNFQS SHQNKSISFF GDHHQGFLPQ 540 NFPTVLGQNQ MFNYQREPLQ SSSYINNIGF ANDDLLGLCT APIIQQEEEQ QQGTLSTLSP 600 INASTLLHYQ D

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MEVHGSRIVR ATGRKDRHSK VSTASGPKDR RVRLSPNTAI QFYNVQDRLG YDRPSKAIDW  60
LIQESQRAIN ALEKTPFQVL SRKIDSSNKA LNWRNVKSED GQFALEQSWS ADKKTELEEL  120
ARHSSKLNSS MQYSADQFPK GSYKEQSSKV CPADVKIQSL NDNQIGNLNL FSSEEDSKIQ  180
SFCELQTHSK GHFHSETKEL SANDAKLRSF CEFQNHQQGH FHSETEKQSP NDAKIQYFCE  240
LQTYQQGHFY SETKKQSPSD AKFQPFRELQ TYQQGHFHSE TKKQSPNDAK IQSFYEMQTY  300
QQGHFHSETK EQSANDAKIP SFCEFRTHQQ DHFHSETKSE STNDAKIQSF GELQTYQQGH  360
FHSETEKQSP GDAKMQSFRG LQTYQQGHFH SETKEQSVND AKIQSFRELQ TYQQGHFHSE  420
TEKQSPNDAK IQSFSELQTY QQGHFHSETE KQSPSDAKIQ SFCELQTYQQ GHLHSETKKQ  480
PPIDPKIQSF CEMQTYPQGH FHSETKNQSA ILSNFFNFQS SHQNKSISFF GDHHQGFLPQ  540
NFPTVLGQNQ MFNYQREPLQ SSSYINNIGF ANDDLLGLCT APIIQQEEEQ QQGTLSTLSP  600
INASTLLHYQ D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	2e-31	TCP family protein