PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU04052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 25298.4 Da PI: 9.8614 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.4 | 2.9e-11 | 21 | 51 | 14 | 43 |
HHHH.HHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRr.ngilKKAeELSvLCdaevaviifsst 43 +R+ +g++KK eE S+LC++++a+iifs++ PHU04052.1 21 LNRKtKGLFKKVEEFSILCGVDAAIIIFSPE 51 567647***********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MARKRLGLTR NRRENVRDSI LNRKTKGLFK KVEEFSILCG VDAAIIIFSP EENQPIVWKS 60 TNQAKELLMR YFSFPTFERI KKLVIHEMYL SKKVDEMKEK VDKIEKMNEE KEIKLLFRQL 120 VEGKNITEFD SRDIKGLLKL FTTTMDKIKE RKEQFILQQQ PSQPPNSPSN FKLAEENVTQ 180 SPCPMKDLIN DQWFVETMSS NQYYFGLVGG SCTKSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 9e-18 | M-type_MADS family protein |