PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03891.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 562aa MW: 63648.9 Da PI: 6.2161

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3e-09	441	489	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+t E ++lv++v ++G g+W+ I +++ +R++ ++k++w+++l PHU03891.1 441 YWSTREVLKLVEGVSEYGVGRWSDIKKMFFpssMRRSPADLKDKWRNLL 489 6*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MQNAIDPFEY NLNTSNESAM SFQQEPEQVV GAASVYFALE EEAIGVEQLL AEPEYDDILN 60 TLLDFNTCAF SVPESYFKEF SASDTVLTKS DCGALQRSHN EGDKTKEKFL DGLSNGDDEN 120 HCFISCEDYL LDIELEEDTP TLHDVTRDIS CIESVNLENQ LADSDGRDCG VHVLTLSGAS 180 TSSDHDATIL DNFDCMSTDK LLKVFREMLG HQTPVSDNQW LKPHMIAGLE NQEISDKNFS 240 FPKRSLDSSE NQGVKVPPAS CQNLLTISTA FASIFTFRRK PRVQQVKRRG RIQWNSFKSL 300 SSVAGEIHLD CPDKWASKES AEENVKCDGM KSGISEQYLK CKPSRRGFGR RYYRRGATVT 360 SQGLGKRNIL PTEDQLIRRE GHLSKDCKAN RAHDDNIYSA EAQDDPSGTL SDQSSDDTSE 420 DDWTIGCETR GTKQDRKRNN YWSTREVLKL VEGVSEYGVG RWSDIKKMFF PSSMRRSPAD 480 LKDKWRNLLR ASCRRLQSRR GVDAKKKHRM RSIPQSVLNR VRELAVIYPH SKQRRSRISS 540 TASRSFSSNV KFDNHLPVLA YE

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MQNAIDPFEY NLNTSNESAM SFQQEPEQVV GAASVYFALE EEAIGVEQLL AEPEYDDILN  60
TLLDFNTCAF SVPESYFKEF SASDTVLTKS DCGALQRSHN EGDKTKEKFL DGLSNGDDEN  120
HCFISCEDYL LDIELEEDTP TLHDVTRDIS CIESVNLENQ LADSDGRDCG VHVLTLSGAS  180
TSSDHDATIL DNFDCMSTDK LLKVFREMLG HQTPVSDNQW LKPHMIAGLE NQEISDKNFS  240
FPKRSLDSSE NQGVKVPPAS CQNLLTISTA FASIFTFRRK PRVQQVKRRG RIQWNSFKSL  300
SSVAGEIHLD CPDKWASKES AEENVKCDGM KSGISEQYLK CKPSRRGFGR RYYRRGATVT  360
SQGLGKRNIL PTEDQLIRRE GHLSKDCKAN RAHDDNIYSA EAQDDPSGTL SDQSSDDTSE  420
DDWTIGCETR GTKQDRKRNN YWSTREVLKL VEGVSEYGVG RWSDIKKMFF PSSMRRSPAD  480
LKDKWRNLLR ASCRRLQSRR GVDAKKKHRM RSIPQSVLNR VRELAVIYPH SKQRRSRISS  540
TASRSFSSNV KFDNHLPVLA YE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	507	RRLQSRRGVDAKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-20	MYB_related family protein