PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03858.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 853aa MW: 93918.7 Da PI: 4.9764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3.1e-09	99	126	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r+ C++G++C++aHg+ PHU03858.1 99 WKTALCSYFRRNEgSCSHGESCRYAHGE 126 8********867**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence
MSTETVNPKF NGNDSPEKLS SDSSEKLNDE FNGKDSSESP KPQLNVQDSS EQLNAKLNSE 60 DISEKLNAES NEQDSSEKKV NLPEKRKREE TETHTNPLWK TALCSYFRRN EGSCSHGESC 120 RYAHGESELR IRPDNTWDPT SQRAKKIARI EFEEEEDEEQ VKCNDVMMPD ALDDDDGQRS 180 SSSGLSKCLV NLPMKWNSDN LRCFLKEHGV TYKSAKKKKG MSVGFVTLEN AEQVETAVKE 240 LDGLPFRNKI LKVGDVVPRA FERKGNSAMS SFLTNQHGEK QTQAGDRLDL TKILDETEAE 300 DQTANDSVLM GRCVRDVVTP LAKMPYADQL EQKKSSLTRT LKTLTRNARK ACPDGVPLPE 360 WILKARDIGG LPCNLEGITE SPLVNGYRNK CEFSVGYSVL GKPTVGFLPG NFREGVTAVE 420 EPVDCPNVSE IACKYAAVFQ DFLQQSTLPI WNRLNNTGFW RQLTVREGRM PGENVEVENP 480 SANISEVMLI VQVSTLDFDD ALVNDELQGL AKAFAVGASS ASPTLPLTAL VVQDHTGISN 540 VAPADAPLRW LPFPGGEDSA VAEAKIHDFV NGLKFCISPT AFFQVNTLAA EKLYSLAGDW 600 ASLGPDTLLF DICCGTGTIG LTLANRVGMV VGIEMNASAV SDAQRNAEIN GIKNCRFICG 660 KAEDVIGSVL KEYLVSPPKV DGLQDIKEKN NQENTISTGK TDCIVNASEA DEESGIGSEN 720 ETQLKNCSSE NLTTPVQHFK NVVAIVDPPR AGLHPTVIKL LRTNSRLRRL VYISCNPETL 780 VANAIELCTP SPDETAKGNN RNNRLWRRMS SATLARHRTK SMPSSEPFQP VKAMAVDLFP 840 HTPHCELVML LER

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence

MSTETVNPKF NGNDSPEKLS SDSSEKLNDE FNGKDSSESP KPQLNVQDSS EQLNAKLNSE  60
DISEKLNAES NEQDSSEKKV NLPEKRKREE TETHTNPLWK TALCSYFRRN EGSCSHGESC  120
RYAHGESELR IRPDNTWDPT SQRAKKIARI EFEEEEDEEQ VKCNDVMMPD ALDDDDGQRS  180
SSSGLSKCLV NLPMKWNSDN LRCFLKEHGV TYKSAKKKKG MSVGFVTLEN AEQVETAVKE  240
LDGLPFRNKI LKVGDVVPRA FERKGNSAMS SFLTNQHGEK QTQAGDRLDL TKILDETEAE  300
DQTANDSVLM GRCVRDVVTP LAKMPYADQL EQKKSSLTRT LKTLTRNARK ACPDGVPLPE  360
WILKARDIGG LPCNLEGITE SPLVNGYRNK CEFSVGYSVL GKPTVGFLPG NFREGVTAVE  420
EPVDCPNVSE IACKYAAVFQ DFLQQSTLPI WNRLNNTGFW RQLTVREGRM PGENVEVENP  480
SANISEVMLI VQVSTLDFDD ALVNDELQGL AKAFAVGASS ASPTLPLTAL VVQDHTGISN  540
VAPADAPLRW LPFPGGEDSA VAEAKIHDFV NGLKFCISPT AFFQVNTLAA EKLYSLAGDW  600
ASLGPDTLLF DICCGTGTIG LTLANRVGMV VGIEMNASAV SDAQRNAEIN GIKNCRFICG  660
KAEDVIGSVL KEYLVSPPKV DGLQDIKEKN NQENTISTGK TDCIVNASEA DEESGIGSEN  720
ETQLKNCSSE NLTTPVQHFK NVVAIVDPPR AGLHPTVIKL LRTNSRLRRL VYISCNPETL  780
VANAIELCTP SPDETAKGNN RNNRLWRRMS SATLARHRTK SMPSSEPFQP VKAMAVDLFP  840
HTPHCELVML LER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein