PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03845.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 854aa    MW: 95159.5 Da    PI: 6.6223
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22190291199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++ +   ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD v+F   + +++ l
  PHU03845.1 190 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykEQRP--AQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVGQKNLVSGDAVLFL--RGEGGDL 284
                 99****************************8743333..348************************************************..4489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PHU03845.1 285 RLGIRRA 291
                 **99986 PP
2Auxin_resp119.72.4e-39316397182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++ka+++++ +G+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L
  PHU03845.1 316 VATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINTRIPIGTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 397
                 6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    
MEIDLNHVVV VMSSEVEKDK NACCNEECDK RGSSGNCSLL YTCTTTTTTT TATTTSSCSS  60
IASSSTSPVV SSIYMELWHA CAGPLTSLPK KGNVVVYFPQ GHMEEAASAT PFSPIKIDFP  120
TFGLQPQIFC RVEDVLLLAN KENDEVYTQL TLLPLPESVA ISLEGKDHED SGTDEEGNGV  180
NPAKSASHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKEQRPAQEL IAKDLHGVEW  240
KFRHIYRGQP RRHLLTTGWS IFVGQKNLVS GDAVLFLRGE GGDLRLGIRR AARPRNGLPE  300
SIIKGQYSGT DVLSSVATAL SAKSTFHVFY SPRASHADFV VPYQKYVKAI NTRIPIGTRF  360
KMRFDLDDSP ERRYSGVVTG ISDMDPFRWP NSKWRCLTVR WDEDIMSNHQ ERVSPWEIDC  420
SVSLPPLSIQ SSPRLKKLRT SPQGPSVLDS HFAGGSALLD FEESVRSSKV LQGQENLGLV  480
SPPYGCDKTV RPLDFELQRV ARHNLMPNGI ENITVGDFVK TQPPTTYSGF MESNRFPKVL  540
QGQEICSLRS LTGKGDVNFG AWGKPEFGCN VFGTYQRPRA NFYPLASEGS RNVFLPYNAM  600
YRAGQDPVGP SYISNFQIEN PTLNQNSIQN VVRREEGGMP KFGNEQRPPE MSKVSIPENH  660
FKTENEDSLK PQASCKLFGV SLTKETSTPS SQSSGKRSCT KVSFHKLHIV NWKLFYFRLY  720
CLYLINGVKV HKQGSLVGRA IDLSRLNGYD DLLIELERLF NMEDLLRDPN KGWRILYTDS  780
ENDMMVVGDD PWHEFCEVVS KIHIYTQEEV EKMTIQGISD DTHSCLEEAP AATMDVSKSS  840
SIGQPDSSLT TIRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein